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--- system_overview [2016/01/20 21:56]
Editor [Software]
+++ system_overview [2016/01/20 23:07]
Editor [2 Racks of compute hardware]
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 ====Software ====
-The following packges are currently installed and supported on the cluster. Users can compile and install their own applications, however, these are not supported.
+ZAMREN provides a range of third party and open source software for general use. The following packages are currently installed and supported on the cluster. Users can compile and install their own applications, however, these are not supported.
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 <tr><td>Package Name</td><td>Brief Description</td><td>Field of Study</td><td>Link to Guides</td></tr>
-<tr><td>GADGET</td><td></td><td></td><td></td></tr>
+<tr><td>GADGET</td><td> GAlaxies with Dark matter and GasintEracT -  A code for collisionless and
-<tr><td>GROMACS</td><td></td><td></td><td></td></tr>
+gasdynamical cosmological simulations
-<tr><td>NAMD</td><td></td><td></td><td></td></tr>
+  </td><td>Astrophysics</td><td>http://astro.phy.vanderbilt.edu/~sinham/tutorials.html</td></tr>
-<tr><td>QUANTUM EXPRESSO</td><td></td><td></td><td></td></tr>
+<tr><td>GROMACS</td><td> GROningen MAchine for Chemical Simulations is used for simulation of Newtonian equations of motion for systems with hundreds to millions of particles. Designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded interactions</td><td>Molecular Dynamics</td><td>http://www.gromacs.org/</td></tr>
+<tr><td>NAMD</td><td>NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems</td><td>Molecular Dynamics</td><td>http://www.ks.uiuc.edu/Research/namd/</td></tr>
+<tr><td>QUANTUM EXPRESSO</td><td>An integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials</td><td></td><td></td></tr>
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+To see the list of available software on a cluster, please use the Modules command. The resulting output lists the name of the software and version number:

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