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--- system_overview [2016/01/20 22:19]
Editor [Software]
+++ system_overview [2017/10/18 20:51] (current)
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 ===== File System =====
-ZAMREN users NFS to serve two directories, HOME and SCRATCH . The HOME directory has a 2.5 GB quota and
+ZAMREN uses NFS to serve two directories, HOME and SCRATCH . The HOME directory has a 2.5 GB quota and
-is  backed up. SCRATCH is not for temporal storage and is purged periodically and hence not backed up.
+is  backed up. SCRATCH is for temporal storage and is purged periodically and hence not backed up.
 It has a 5TB quota.
@@ Line 34: / Line 35: @@
 ==== Scratch ====
-It is a link in a users home directory in the format /home/xxxxxxxx/scratch/ where xxxxxxxx is the username. The directory is meant for storing temporary files and is accessible from compute nodes. Execution of jobs should be done from here.
+The directory is meant for storing temporary files and is accessible from compute nodes. Execution of jobs should be done from here.
-Please noted that files are not backup up in this directory and can be purged at anytime. No recovery services will be available for files once purged. Users are urged to be saving their files in their home directories.
+Please note that files are not backup up in this directory and can be purged at anytime. No recovery services will be available for files once purged. Users are urged to be saving their files in their home directories.
 ====Software ====
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 gasdynamical cosmological simulations
   </td><td>Astrophysics</td><td>http://astro.phy.vanderbilt.edu/~sinham/tutorials.html</td></tr>
-<tr><td>GROMACS</td><td></td><td></td><td>http://www.gromacs.org/</td></tr>
+<tr><td>GROMACS</td><td> GROningen MAchine for Chemical Simulations is used for simulation of Newtonian equations of motion for systems with hundreds to millions of particles. Designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded interactions</td><td>Molecular Dynamics</td><td>http://www.gromacs.org/</td></tr>
-<tr><td>NAMD</td><td></td><td></td><td></td></tr>
+<tr><td>NAMD</td><td>NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems</td><td>Molecular Dynamics</td><td>http://www.ks.uiuc.edu/Research/namd/</td></tr>
-<tr><td>QUANTUM EXPRESSO</td><td></td><td></td><td></td></tr>
+<tr><td>QUANTUM EXPRESSO</td><td>An integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials</td><td></td><td></td></tr>
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